KEMRI | Wellcome Trust

KEMRI | Wellcome Trust

Genomics and infectious disease transmission

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21-38 of 38 ARTICLES
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https://doi.org/10.12688/wellcomeopenres.15703.2
Research Article metrics
Revised
Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya
[version 2; peer review: 2 approved]
Irene Wangwa Adema, Everlyn Kamau, Joyce Uchi Nyiro, Grieven P. Otieno, Clement Lewa, Patrick K. Munywoki, D. James Nokes
Peer Reviewers David P Moore; Ting Shi
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 24 Sep 2020
https://doi.org/10.12688/wellcomeopenres.16264.1
Research Article metrics
Using contact data to model the impact of contact tracing and physical distancing to control the SARS-CoV-2 outbreak in Kenya
[version 1; peer review: 1 approved, 1 approved with reservations]
Moritz Wagner, Ivy K. Kombe, Moses Chapa Kiti, Rabia Aziza, Edwine Barasa, D. James Nokes
Peer Reviewers Nicholas Steyn and Alex James; Mark Kimathi
  • Funders
  • Wellcome Trust
  • Department of Health & Social Care
  • National Institute for Health Research
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 10 Sep 2020
https://doi.org/10.12688/wellcomeopenres.16222.1
Research Article metrics
Infection prevention and control during the COVID-19 pandemic: challenges and opportunities for Kenyan public hospitals
[version 1; peer review: 2 approved]
Michuki Maina, Olga Tosas-Auguet, Mike English, Constance Schultsz, Jacob McKnight
Peer Reviewers Angela Dramowski; Lydia Okutoyi
  • Funders
  • Wellcome Trust
  • Economic and Social Research Council
  • African Academy of Sciences
  • Alliance for Accelerating Excellence in Science in Africa
PUBLISHED 10 Sep 2020
https://doi.org/10.12688/wellcomeopenres.15568.1
Research Article metrics
Congenital microcephaly unrelated to flavivirus exposure in coastal Kenya
[version 1; peer review: 2 approved, 1 approved with reservations]
Hellen C. Barsosio, John N. Gitonga, Henry K. Karanja, Doris K. Nyamwaya, Donwilliams O. Omuoyo, Everlyn Kamau, Mainga M. Hamaluba, Joyce U. Nyiro, Barnes S. Kitsao, Amek Nyaguara, Stella Mwakio, Charles R. Newton, Rosemary Sang, Daniel Wright, Eduard J. Sanders, Anna C. Seale, Charles N. Agoti, James A. Berkley, Philip Bejon, George M. Warimwe
Peer Reviewers Lavinia Schuler-Faccini; Jan Felix Drexler and Thomas Jaenisch; Helen Dolk
  • Funders
  • Wellcome Trust
  • Medical Research Council
  • Gates Foundation
  • Newton Fund
PUBLISHED 15 Nov 2019
https://doi.org/10.12688/wellcomeopenres.15550.1
Research Article metrics
Larval habitat diversity and mosquito species distribution along the coast of Kenya
[version 1; peer review: 1 approved, 2 approved with reservations]
Miriam Karuitha, Joel Bargul, Joel Lutomiah, Simon Muriu, Joseph Nzovu, Rosemary Sang, Joseph Mwangangi, Charles Mbogo
Peer Reviewers Bryson Alberto Ndenga; John Paul Mutebi; Francis Mutuku
  • Funder
  • Wellcome Trust
PUBLISHED 13 Nov 2019
https://doi.org/10.12688/wellcomeopenres.15268.2
Study Protocol metrics
Revised
Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors
[version 2; peer review: 2 approved]
Moses Chapa Kiti, Alessia Melegaro, Ciro Cattuto, David James Nokes
Peer Reviewers Adam J. Kucharski; Kin-on Kwok
  • Funders
  • Wellcome Trust
  • African Academy of Sciences
  • New Partnership for Africa's Development
  • Department for International Development, UK Government
LATEST VERSION PUBLISHED 22 Aug 2019
https://doi.org/10.12688/wellcomeopenres.15186.2
Research Article metrics
Revised
Gametocyte carriage in an era of changing malaria epidemiology: A 19-year analysis of a malaria longitudinal cohort
[version 2; peer review: 2 approved]
Michelle K. Muthui, Polycarp Mogeni, Kennedy Mwai, Christopher Nyundo, Alex Macharia, Thomas N. Williams, George Nyangweso, Juliana Wambua, Daniel Mwanga, Kevin Marsh, Philip Bejon, Melissa C. Kapulu
Peer Reviewers Anna Rosanas-Urgell; Katharine R. Trenholme
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 28 May 2019
https://doi.org/10.12688/wellcomeopenres.14908.2
Research Article metrics
Revised
Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013
[version 2; peer review: 2 approved, 1 approved with reservations]
Betty E. Owor, Mike J. Mwanga, Regina Njeru, Robert Mugo, Mwanajuma Ngama, Grieven P. Otieno, D.J. Nokes, C.N. Agoti
Peer Reviewers Ernest Wandera Apondi; Mathew D Esona; Martin Munene Nyaga
  • Funders
  • Wellcome Trust
  • GAVI Alliance
LATEST VERSION PUBLISHED 15 May 2019
https://doi.org/10.12688/wellcomeopenres.14836.2
Research Article metrics
Revised
Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance
[version 2; peer review: 2 approved]
John Mwita Morobe, Joyce U. Nyiro, Samuel Brand, Everlyn Kamau, Elijah Gicheru, Fredrick Eyase, Grieven P. Otieno, Patrick K. Munywoki, C.N. Agoti, D.J. Nokes
Peer Reviewers Ian M. Mackay; Mbayame Ndiaye Niang
  • Funders
  • Wellcome Trust
  • DELTAS Africa Initiative
LATEST VERSION PUBLISHED 27 Mar 2019
https://doi.org/10.12688/wellcomeopenres.11073.4
Research Article metrics
Revised
Variation in the effectiveness of insecticide treated nets against malaria and outdoor biting by vectors in Kilifi, Kenya
[version 4; peer review: 1 approved, 3 approved with reservations]
Alice Kamau, Joseph M. Mwangangi, Martin K. Rono, Polycarp Mogeni, Irene Omedo, Janet Midega, J. Anthony G. Scott, Philip Bejon
Peer Reviewers Heiko Becher; Seynabou Sougoufara; Gerry F Killeen; Sarah J. Moore
  • Funders
  • Wellcome Trust
  • WHO-TDR
LATEST VERSION PUBLISHED 03 Dec 2018
https://doi.org/10.12688/wellcomeopenres.13538.2
Research Article metrics
Revised
Evaluating the performance of tools used to call minority variants from whole genome short-read data
[version 2; peer review: 2 approved]
Khadija Said Mohammed, Nelson Kibinge, Pjotr Prins, Charles N. Agoti, Matthew Cotten, D.J. Nokes, Samuel Brand, George Githinji
Peer Reviewers Brad A. Chapman; Micha M. Bayer
  • Funders
  • Wellcome Trust
  • DELTAS Africa Initiative
LATEST VERSION PUBLISHED 13 Sep 2018
https://doi.org/10.12688/wellcomeopenres.14662.1
Research Article metrics
Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya: baseline epidemiological observations
[version 1; peer review: 2 approved]
Joyce Uchi Nyiro, Patrick K. Munywoki, Everlyn Kamau, C.N. Agoti, Alex Gichuki, Timothy Etyang, Grieven P. Otieno, D. James Nokes
Peer Reviewers Ting Shi; David P Moore
  • Funder
  • Wellcome Trust
PUBLISHED 25 Jul 2018
https://doi.org/10.12688/wellcomeopenres.11910.2
Research Article metrics
Revised
Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome
[version 2; peer review: 2 approved, 1 approved with reservations]
Abdirahman I. Abdi, Lu Yu, David Goulding, Martin K. Rono, Philip Bejon, Jyoti Choudhary, Julian Rayner
Peer Reviewers Matthias Marti; Pawan Malhotra and Inderjeet Kaur; Alister G. Craig and Climent Casals-Pascual
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 22 Nov 2017
https://doi.org/10.12688/wellcomeopenres.12053.1
Research Article metrics
A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections
[version 1; peer review: 2 approved]
George Githinji, Peter C. Bull
Peer Reviewers Mary M. Rorick; Thomas Lavstsen
  • Funder
  • Wellcome Trust
PUBLISHED 19 Sep 2017
https://doi.org/10.12688/wellcomeopenres.10784.2
Research Article metrics
Revised
Micro-epidemiological structuring of Plasmodium falciparum parasite populations in regions with varying transmission intensities in Africa
[version 2; peer review: 4 approved]
Irene Omedo, Polycarp Mogeni, Teun Bousema, Kirk A. Rockett, Alfred Amambua-Ngwa, Isabella Oyier, Jennifer C. Stevenson, Amrish Y. Baidjoe, Etienne P. de Villiers, Greg Fegan, Amanda Ross, Christina Hubbart, Anne Jeffreys, Thomas N. Williams, Dominic Kwiatkowski, Philip Bejon
Peer Reviewers Michel Tibayrenc; Cristian Koepfli; Christopher Delgado-Ratto; Liwang Cui
  • Funders
  • Wellcome Trust
  • Grand Challenges Canada
  • Department for International Development, UK Government
  • Medical Research Council
  • Novartis Foundation
  • Gottfied und Julia Bangerter-Rhyner Stiftung
  • Gates Foundation
LATEST VERSION PUBLISHED 08 Sep 2017
https://doi.org/10.12688/wellcomeopenres.11228.2
Research Article metrics
Revised
Geographic-genetic analysis of Plasmodium falciparum parasite populations from surveys of primary school children in Western Kenya
[version 2; peer review: 2 approved]
Irene Omedo, Polycarp Mogeni, Kirk A. Rockett, Alice Kamau, Christina Hubbart, Anna Jeffreys, Lynette Isabella Ochola-Oyier, Etienne P. de Villiers, Caroline W. Gitonga, Abdisalan M. Noor, Robert W. Snow, Dominic Kwiatkowski, Philip Bejon
Peer Reviewers Liwang Cui; Lucy C. Okell
  • Funders
  • Wellcome Trust
  • Department for International Development, UK Government
  • Medical Research Council
LATEST VERSION PUBLISHED 05 Sep 2017
https://doi.org/10.12688/wellcomeopenres.12187.1
Research Article metrics
A geo-coded inventory of anophelines in the Afrotropical Region south of the Sahara: 1898-2016
[version 1; peer review: 3 approved]
David Kyalo, Punam Amratia, Clara W. Mundia, Charles M. Mbogo, Maureen Coetzee, Robert W. Snow
Peer Reviewers  Josiane Etang; Michael J. Bangs; Rousseau Djouaka
  • Funders
  • Wellcome Trust
  • Department for International Development, UK Government
PUBLISHED 26 Jul 2017
https://doi.org/10.12688/wellcomeopenres.10284.2
Research Article metrics
Revised
Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study
[version 2; peer review: 3 approved, 1 approved with reservations]
Miriam Wathuo, Graham F. Medley, D.J. Nokes, Patrick K. Munywoki
Peer Reviewers Benjamin J. Cowling; H. Rogier van Doorn and Lien Anh Ha Do; Peter F. Wright; John DeVincenzo
  • Funder
  • Wellcome Trust
LATEST VERSION PUBLISHED 13 Mar 2017
21-38 of 38 ARTICLES
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